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1

Getting Bacteria in Shape: Synthetic Morphology Approaches for the Design of Efficient Microbial Cell Factories

Volke, Daniel C., Nikel, Pablo I.

Journal:

Advanced Biosystems

Year:

2018

Language:

english

File:

PDF, 2.43 MB

english, 2018

2

Pseudomonas putida as a functional chassis for industrial biocatalysis: From native biochemistry to trans -metabolism

Nikel, Pablo I., de Lorenzo, Víctor

Journal:

Metabolic Engineering

Year:

2018

Language:

english

File:

PDF, 1.33 MB

english, 2018

3

Bioremediation 3 . 0 : Engineering pollutant-removing bacteria in the times of systemic biology

Dvořák, Pavel, Nikel, Pablo I., Damborský, Jiří, de Lorenzo, Víctor

Journal:

Biotechnology Advances

Year:

2017

Language:

english

File:

PDF, 2.23 MB

english, 2017

4

A post-translational metabolic switch enables complete decoupling of bacterial growth from biopolymer production in engineered Escherichia coli

Durante-Rodríguez, Gonzalo, de Lorenzo, Victor, Nikel, Pablo Ivan

Journal:

ACS Synthetic Biology

Year:

2018

Language:

english

File:

PDF, 2.00 MB

english, 2018

5

Synthetic control of plasmid replication enables target- and self-curing of vectors and expedites genome engineering of Pseudomonas putida

Volke, Daniel C., Friis, Laura, Wirth, Nicolas T., Turlin, Justine, Nikel, Pablo I.

Journal:

Metabolic Engineering Communications

Year:

2020

Language:

english

File:

PDF, 1.65 MB

english, 2020

6

Pseudomonas putida

Volke, Daniel C., Calero, Patricia, Nikel, Pablo I.

Journal:

Trends in Microbiology

Year:

2020

File:

PDF, 681 KB

2020

7

A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida

Calero, Patricia, Volke, Daniel C., Lowe, Phillip T., Gotfredsen, Charlotte H., OâHagan, David, Nikel, Pablo I.

Journal:

Nature Communications

Year:

2020

File:

PDF, 912 KB

2020

8

Poly(3-hydroxybutyrate) synthesis from glycerol by a recombinantEscherichia coli arcAmutant in fed-batch microaerobic cultures

Pablo I. Nikel, M. Julia Pettinari, Miguel A. Galvagno, Beatriz S. Méndez

Journal:

Applied Microbiology and Biotechnology

Year:

2008

Language:

english

File:

PDF, 234 KB

english, 2008

9

Poly(3-hydroxybutyrate) synthesis from glycerol by a recombinantEscherichia coli arcAmutant in fed-batch microaerobic cultures

Pablo I. Nikel, M. Julia Pettinari, Miguel A. Galvagno, Beatriz S. Méndez

Journal:

Applied Microbiology and Biotechnology

Year:

2008

Language:

english

File:

PDF, 43 KB

english, 2008

10

Metabolic selective pressure stabilizes plasmids carrying biosynthetic genes for reduced biochemicals inEscherichia coliredox mutants

Pablo I. Nikel, M. Julia Pettinari, Miguel A. Galvagno, Beatriz S. Méndez

Journal:

Applied Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 288 KB

english, 2010

11

dye (arc) mutants: insights into an unexplained phenotype and its suppression by the synthesis of poly (3-hydroxybutyrate) in Escherichia coli recombinants

Jimena A. Ruiz, Rubén O. Fernández, Pablo I. Nikel, Beatriz S. Méndez, M. Julia Pettinari

Journal:

FEMS Microbiology Letters

Year:

2006

Language:

english

File:

PDF, 146 KB

english, 2006

12

dye (arc) mutants: insights into an unexplained phenotype and its suppression by the synthesis of poly (3-hydroxybutyrate) in Escherichia coli recombinants

Jimena A. Ruiz, Rubén O. Fernández, Pablo I. Nikel, Beatriz S. Méndez, M. Julia Pettinari

Journal:

FEMS Microbiology Letters

Year:

2006

Language:

english

File:

PDF, 34 KB

english, 2006

13

Poly(3-hydroxybutyrate) synthesis in microaerobic fed-batch cultures by a recombinant Escherichia coli arcA mutant using glycerol as a carbon source

Pablo Nikel, Julia Pettinari, Beatriz Mendez

Journal:

Journal of Biotechnology

Year:

2007

Language:

english

File:

PDF, 80 KB

english, 2007

14

Effect of the granule associated protein phasin (PhaP) on cell growth and poly(3-hydroxybutyrate) (PHB) accumulation from glycerol in bioreactor cultures of recombinant E. coli

Alejandra de Almeida, Pablo Nikel, Andrea Giordano, Beatriz Mendez, Julia Pettinari

Journal:

Journal of Biotechnology

Year:

2007

Language:

english

File:

PDF, 76 KB

english, 2007

15

The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress

Chavarría, Max, Nikel, Pablo I., Pérez-Pantoja, Danilo, de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2013

Language:

english

File:

PDF, 896 KB

english, 2013

16

Implantation of unmarked regulatory and metabolic modules in Gram-negative bacteria with specialised mini-transposon delivery vectors

Nikel, Pablo I., de Lorenzo, Víctor

Journal:

Journal of Biotechnology

Year:

2013

Language:

english

File:

PDF, 921 KB

english, 2013

17

Engineering an anaerobic metabolic regime in Pseudomonas putida KT2440 for the anoxic biodegradation of 1,3-dichloroprop-1-ene

Nikel, Pablo I., de Lorenzo, Víctor

Journal:

Metabolic Engineering

Year:

2013

Language:

english

File:

PDF, 1003 KB

english, 2013

18

Accumulation of inorganic polyphosphate enables stress endurance and catalytic vigour inPseudomonas putidaKT2440

Pablo I Nikel, Max Chavarría, Esteban Martínez-García…

Journal:

Microbial Cell Factories

Year:

2013

Language:

english

File:

PDF, 684 KB

english, 2013

19

The metabolic cost of flagellar motion in P seudomonas putida KT2440

Martínez-García, Esteban, Nikel, Pablo I., Chavarría, Max, de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

20

The private life of environmental bacteria: pollutant biodegradation at the single cell level

Nikel, Pablo Iván, Silva-Rocha, Rafael, Benedetti, Ilaria, de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 749 KB

english, 2014

21

Biotechnological domestication of pseudomonads using synthetic biology

Nikel, Pablo I., Martínez-García, Esteban, de Lorenzo, Víctor

Journal:

Nature Reviews Microbiology

Year:

2014

Language:

english

File:

PDF, 1.28 MB

english, 2014

22

Metabolic engineering strategies of Pseudomonas putida KT2440 for biocatalysis under conditions with restricted oxygen supply

Nikel, Pablo I., de Lorenzo, Víctor

Journal:

New Biotechnology

Year:

2012

Language:

english

File:

PDF, 66 KB

english, 2012

23

Robustness of Pseudomonas putida KT2440 as a host for ethanol biosynthesis

Nikel, Pablo I., de Lorenzo, Víctor

Journal:

New Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.34 MB

english, 2014

24

Stochastic activation of the GlpR-controlled glp gene cluster in Pseudomonas putida KT2440 results in a bistable growth pattern on glycerol

Nikel, Pablo Ivan, de Lorenzo, Victor

Journal:

New Biotechnology

Year:

2014

Language:

english

File:

PDF, 67 KB

english, 2014

25

ESCHERICHIA COLI REDOX MUTANTS AS MICROBIAL CELL FACTORIES FOR THE SYNTHESIS OF REDUCED BIOCHEMICALS

Ruiz, Jimena A., de Almeida, Alejandra, Godoy, Manuel S., Mezzina, Mariela P., Bidart, Gonzalo N., Méndez, Beatriz S., Pettinari, M. Julia, Nikel, Pablo I.

Journal:

Computational and Structural Biotechnology Journal

Year:

2012

Language:

english

File:

PDF, 2.95 MB

english, 2012

26

Metabolic and regulatory rearrangements underlying glycerol metabolism in Pseudomonas putida KT2440

Nikel, Pablo I., Kim, Juhyun, de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2014

Language:

english

File:

PDF, 1.26 MB

english, 2014

27

Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes

Kim, Juhyun, Oliveros, Juan Carlos, Nikel, Pablo I., de Lorenzo, Víctor, Silva-Rocha, Rafael

Journal:

Environmental Microbiology Reports

Year:

2013

Language:

english

File:

PDF, 658 KB

english, 2013

28

Redox driven metabolic tuning

Nikel, Pablo I., de Almeida, Alejandra, Giordano, Andrea M., Pettinari, M. Julia

Journal:

Bioengineered Bugs

Year:

2010

Language:

english

File:

PDF, 1.12 MB

english, 2010

29

Genome reduction boosts heterologous gene expression in Pseudomonas putida

Lieder, Sarah, Nikel, Pablo I, de Lorenzo, Víctor, Takors, Ralf

Journal:

Microbial Cell Factories

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

30

Pseudomonas2.0: genetic upgrading ofP. putidaKT2440 as an enhanced host for heterologous gene expression

Martínez-García, Esteban, Nikel, Pablo I, Aparicio, Tomás, de Lorenzo, Víctor

Journal:

Microbial Cell Factories

Year:

2014

Language:

english

File:

PDF, 1.91 MB

english, 2014

31

ArcA Redox Mutants as a Source of Reduced Bioproducts

Pettinari, M.Julia, Nikel, Pablo I., Ruiz, Jimena A., M&eacute, ndez, Beatriz S.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2008

Language:

english

File:

PDF, 167 KB

english, 2008

32

Escherichia coli arcA Mutants: Metabolic Profile Characterization of Microaerobic Cultures using Glycerol as a Carbon Source

Nikel, Pablo I., Pettinari, M.Julia, Ram&iacute, rez, M.Cecilia, Galvagno, Miguel A., M&eacute, ndez, Beatriz S.

Journal:

Journal of Molecular Microbiology and Biotechnology

Year:

2008

Language:

english

File:

PDF, 173 KB

english, 2008

33

Endogenous Stress Caused by Faulty Oxidation Reactions Fosters Evolution of 2,4-Dinitrotoluene-Degrading Bacteria

Pérez-Pantoja, Danilo, Nikel, Pablo I., Chavarría, Max, de Lorenzo, Víctor, Matic, Ivan

Journal:

Year:

2013

Language:

english

File:

PDF, 1.36 MB

english, 2013

34

The Glycerol-Dependent Metabolic Persistence of Pseudomonas putida KT2440 Reflects the Regulatory Logic of the GlpR Repressor

Nikel, Pablo I., Romero-Campero, Francisco J., Zeidman, Joshua A., Goñi-Moreno, Ángel, de Lorenzo, Víctor

Journal:

Year:

2015

Language:

english

File:

PDF, 1.91 MB

english, 2015

35

[Springer Protocols Handbooks] || Quantitative Physiology Approaches to Understand and Optimize Reducing Power Availability in Environmental Bacteria

Nikel, Pablo I.

Year:

2015

Language:

english

File:

PDF, 393 KB

english, 2015

36

The CreC regulator of Escherichia coli , a new target for metabolic manipulations

Godoy, Manuel S., Nikel, Pablo I., Cabrera Gomez, José G., Pettinari, M. Julia

Journal:

Applied and Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.27 MB

english, 2015

37

Pseudomonas putida KT2440 Strain Metabolizes Glucose through a Cycle Formed by Enzymes of the Entner-Doudoroff, Embden-Meyerhof-Parnas, and Pentose Phosphate Pathways

Nikel, Pablo I., Chavarría, Max, Fuhrer, Tobias, Sauer, Uwe, de Lorenzo, Víctor

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.98 MB

english, 2015

38

Genetic programming of catalytic Pseudomonas putida biofilms for boosting biodegradation of haloalkanes

Benedetti, Ilaria, Lorenzo, Víctor de, Nikel, Pablo I.

Journal:

Metabolic Engineering

Year:

2015

Language:

english

File:

PDF, 4.29 MB

english, 2015

39

Data on the standardization of a cyclohexanone-responsive expression system for Gram-negative bacteria

Benedetti, Ilaria, Nikel, Pablo I., de Lorenzo, Víctor

Journal:

Year:

2016

Language:

english

File:

PDF, 696 KB

english, 2016

40

Exacerbation of substrate toxicity by IPTG inEscherichia coliBL21(DE3) carrying a synthetic metabolic pathway

Dvorak, Pavel, Chrast, Lukas, Nikel, Pablo I., Fedr, Radek, Soucek, Karel, Sedlackova, Miroslava, Chaloupkova, Radka, de Lorenzo, Víctor, Prokop, Zbynek, Damborsky, Jiri

Journal:

Microbial Cell Factories

Year:

2015

Language:

english

File:

PDF, 2.37 MB

english, 2015

41

Metabolic profile ofMycobacterium smegmatisreveals Mce4 proteins are relevant for cell wall lipid homeostasis

Santangelo, María Paz, Heuberger, Adam, Blanco, Federico, Forrellad, Marina, Taibo, Catalina, Klepp, Laura, Sabio García, Julia, Nikel, Pablo I., Jackson, Mary, Bigi, Fabiana

Journal:

Year:

2016

Language:

english

File:

PDF, 2.32 MB

english, 2016

42

From dirt to industrial applications: Pseudomonas putida as a Synthetic Biology chassis for hosting harsh biochemical reactions

Nikel, Pablo I, Chavarría, Max, Danchin, Antoine, de Lorenzo, Víctor

Journal:

Current Opinion in Chemical Biology

Year:

2016

Language:

english

File:

PDF, 995 KB

english, 2016

43

Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response

Svenningsen, Nanna B., Pérez-Pantoja, Danilo, Nikel, Pablo I., Nicolaisen, Mette H., de Lorenzo, Víctor, Nybroe, Ole

Journal:

BMC Microbiology

Year:

2015

Language:

english

File:

PDF, 814 KB

english, 2015

44

The revisited genome of Pseudomonas putida KT2440 enlightens its value as a robust metabolic chassis

Belda, Eugeni, van Heck, Ruben G. A., Lopez-Sanchez, Maria José, Cruveiller, Stéphane, Barbe, Valérie, Fraser, Claire, Klenk, Hans-Peter, Petersen, Jörn, Morgat, Anne, Nikel, Pablo I., Vallenet, David

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 586 KB

english, 2016

45

The RNA chaperone Hfq enables the environmental stress tolerance super-phenotype of Pseudomonas putida

Arce-Rodríguez, Alejandro, Calles, Belén, Nikel, Pablo I., de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2015

Language:

english

File:

PDF, 1.01 MB

english, 2015

46

Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds

Nikel, Pablo I., Pérez-Pantoja, Danilo, de Lorenzo, Víctor

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 740 KB

english, 2016

47

Unexpected functions of automatically annotated genes: a lesson learnt from Bacillus subtilis

Nikel, Pablo I.

Journal:

Environmental Microbiology

Year:

2016

Language:

english

File:

PDF, 547 KB

english, 2016

48

DNA damage elicits a different SOS response in Pseudomonas putida and Escherichia coli

Akkaya, Özlem, Nikel, Pablo Ivan, Pérez-Pantoja, Danilo, de Lorenzo, Víctor

Journal:

New Biotechnology

Year:

2016

Language:

english

File:

PDF, 54 KB

english, 2016

49

A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida

Chavarría, Max, Goñi-Moreno, Ángel, de Lorenzo, Víctor, Nikel, Pablo I., Dorrestein, Pieter C.

Journal:

Year:

2016

Language:

english

File:

PDF, 1.42 MB

english, 2016

50

New Transposon Tools Tailored for Metabolic Engineering of Gram-Negative Microbial Cell Factories

MartÃnez-GarcÃa, Esteban, Aparicio, TomÃ¡s, de Lorenzo, VÃctor, Nikel, Pablo I.

Journal:

Frontiers in Bioengineering and Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.07 MB

english, 2014

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